Release 5 June 2012 TraDES-2 https://us-east.manta.joyent.com/profhogue/public/TraDES-2/index.html
2 Sept 2012 Beta Release of the TraDES R Analysis Package (attached at bottom of this web page)
2 Sept 2012 Beta Release of the TraDES R Analysis Package (attached at bottom of this web page)
| Trajectory Directed Ensemble Sampling Create large ensembles of high-quality protein structures quickly, ranging from near-native to partially unfolded to intrinsically unfolded. TraDES is a system for directly controlling and sampling protein conformational space. TraDES has been previously used for measuring the vastness of protein conformational space and testing the hypothesis of a brute force solution to the protein folding problem. Over 10 Billion protein structures have been produced by TraDES software in previous distributed computing experiments. TODAY TraDES is a growing concern for scientists studying proteins that do not fold - intrinsically disordered proteins. NMR scientists are the primary users of the TraDES package. | TraDES Programs: The package is comprised of binary executable programs and accessory programs and scripts as well as protein structure data files that map out protein conformational space in a probabilistic way. The main programs are:
Trajectory Distributions - Controlling the Sampling of Conformational Space The concept of the trajectory distribution may be new to many protein scientists. A trajectory distribution is simply a map of available conformational space at an amino acid residue. Read more.... |